本次課程感謝「陽明大學生資所楊永正老師」及「中研院統計所陳君厚老師」提供機會，由本人吳漢銘負責教授微陣列數據分析課程中之一主題:
Clustering and Visualization。
2005/07/27
09:10-12:00,
Lecture
Clustering &
Visualization (I) [pdf, 6.37MB]
12:10-13:00, Lab
Clustering &
Visualization using R [pdf, 298KB]
2005/07/29
09:10-12:00,
Lecture
Clustering &
Visualization (II) [pdf, 5.08MB]
12:10-13:00, Lab
Lab Handout: GAP [pdf,
1.26 MB]
-
Software:
GAP Web
Site
(電腦室已安裝，學員無須下載)。
- Data sets:
- The Psychosis Disorder Data (SAPSSANS9550.txt)
- Yeast cell cycle (TradCellCycle103_alpha.txt)
- Microarray GenePix *.gpr file. (MA-Customized_12_4_17_17)
(以上data在GAP程式安裝完成後，位於"C:\Program Files\GAP\Data")
Problem set:
HarvardLungCancer_Data_Fig3.txt
- Subset of the Dataset B from
Bhattacharjee et al., (2001).
- Samples (columns): 113 patients of
lung adenocarcinoma (AD) with clinical records.
- Genes (rows): 68 maker genes in five
functional groups.
- Reference:
A. Bhattacharjee et al. (2001), Classification of human lung
carcinomas by mRNA expression profiling reveals distinct
adenocarcinoma subclasses. PNAS. 98 (24), 13790-13795. [Web]
[Supporting
Information] [Meyerson's
Lab]
Examination:
-
請列舉出以下五種
hierarchical clustering方法的比較、包含特性、差異、或相似的地方: single-linkage,
complete-linkage, average-linkage, centroid-linkage and Ward's method.
(ps1: 不是寫出這五種方法的定義)!
(ps2: 需同時註明出處)。
給分辦法: 列出一條，得一分。(無上限)(抄襲者，整份以零分計算!)
範列: clustering作業_吳小明.doc
將作業e-mail至
hmwu@stat.sinica.edu.tw
期限: 2005-08-07, 24:00.
[成績公告: 成績給法包含:
正確性及用心程度。] [2005-08-09]
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